Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs5831315 chr2:54830407 T/TG 7.8E-5 129 46.3 44.05 22.42 KM Plot
TGCT rs58345358 chr14:78136231 G/GA 8.03E-5 133 45.47 39.38 18.07 KM Plot
TGCT rs58519241 chr13:21845006 C/A 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs58610709 chr2:121952314 C/T 1.0E-8 134 41.27 60.63 20.6 KM Plot
TGCT rs58629383 chr7:127786076 T/TA 1.78E-9 134 42.27 37.53 12.55 KM Plot
TGCT rs58633841 chr2:74108378 ATTC/A 2.7E-7 129 40.57 95.37 22.83 KM Plot
TGCT rs58654892 chr8:120870874 ATT/A 9.37E-5 133 42.27 37.3 17.1 KM Plot
TGCT rs58775922 chr4:37239951 T/A 0 134 46.07 31.75 0.5 KM Plot
TGCT rs58829804 chr6:28337903 CACTG/C 0 134 45.83 29.65 0.57 KM Plot
TGCT rs58894024 chr6:15201476 G/A 0.000133 130 37.42 45.93 NA KM Plot
TGCT rs5894297 chr8:116901047 T/TG 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs58960054 chr6:156983211 A/G 0.000126 132 41.97 60.63 59.27 KM Plot
TGCT rs59044667 chr14:71043704 A/G 1.77E-5 131 41.27 66.9 21.43 KM Plot
TGCT rs59096474 chr7:127725711 G/A 1.42E-13 133 43.68 37.32 17.1 KM Plot
TGCT rs59110799 chr7:128716007 G/T 2.04E-5 132 42.1 31.17 17.1 KM Plot